I managed to fix my issue. Here's how: I installed windows NT 4.0 to virtualbox 6.0 on windows 8.1 as per this guide https://i12bretro.github.io/tutorials/0077.html. I made the VM's hard disk as a VHD file *IMPORTANT*. However, instead of installing to NTFS, I installed to FAT. (This did not require me to preformat the partition, but I expected it to). I also gave the VM 4 GB of RAM and a 1024MB hard drive. Then, after booting the VM and it working, I used the action menu in windows disk manager (create and format hard disk partitions) to mount the VHD file of the VM. Then, I used minitool partition wizard 9.0 free to copy the partition to the correct spot on my drives (and resize it to 2GB). Then, I used EasyBCD to make the new boot menu entry for it, as well as deleting the previous entry for NT 4.0, since the partition was overridden by the new install. I had to make sure that the disk that NT 4.0 is on is plugged into one of the first 3 sata ports as those are the first emulated sata/IDE controller and NT 4.0 cannot access the second one during the boot sequence. Since my NT 4.0 is within the first 131GB of the drive, I did not have to install LBA48 supporting disk drivers, but drivers such as UniATA exist. Once booted in, I installed the USB patch for windows NT 4.0 (after changing the drive letter of NT 4.0's partition to C: *important*) and force rebooted the computer to get the mouse to work (must wait approx 1 min after the computer has started for it to pick up the mouse and keyboard). Then, I removed drive letters from all partitions besides Win NT itself and the other "unknown" partition on another disk that it won't let me de-letter ("boot drives MUST have a letter"). Once in this state, my issue was fixed. Windows 7 no longer becomes a sluggish nightmare after booting into windows NT 4.0, but windows 7 can still access all drives and partitions, including NT 4.0's. I believe that I could even get NT 4.0 to see all the partitions that it could with UniATA and still not have issues, but I don't really care and would rather not find out. I did not delete NTFS.SYS or disable the service/device as I did not need to. I now have installed USB and video drivers. Besides sound, I call NT 4.0 complete. Thanks for all the help, even if the long way ended up being the answer.
All that's left for my system to be complete is to install Windows 10 (throughout one process or another (I believe trying to fix windows 2000 before) it got corrupted and deleted), and make sure everything is 100% ready to go.
I would love to get audio on 95, 3.1, and NT 4.0, but that would be for another thread.
Again, thanks!