Yep, I've recorded doing the same thing but this time with both displays visible so you can see the actions I'm taking. The game I was using to demonstrate this behavior was Garry's Mod (as you pointed out afterwards), but I've confirmed that other games like Counter Strike: Source, Counter Strike: Global Offensive, Call of Duty: Modern Warfare, and more cause this behavior.
I might have been using "exclusive fullscreen" incorrectly. I probably should have been referring to it as just "fullscreen" -- I wanted to differentiate between "borderless windowed" and "fullscreen" as explicitly as possible since this doesn't seem to happen when using "borderless windowed" mode.
Also, I was incorrect when I initially reported the behavior. I stated that the working area on all displays break, but it seems that the primary display's working area actually does not. You can see in the video linked below I demonstrate that maximizing the Notepad window on the primary display works just fine after opening the game, whereas maximizing it on the secondary display causes the window bounds to exceed the taskbar area. You can also see that this does not happen when StartAllBack is uninstalled. Perhaps this has something to do with the mismatched resolution of my primary and secondary displays (1440p vs 1080p)? Note that I start the video with the latest RC of StartAllBack installed, open the game, demonstrate the maximize behavior, uninstall StartAllBack, open the game again, and then demonstrate that the erroneous maximize behavior does not occur when StartAllBack is uninstalled.
https://streamable.com/i2wnaf